Species	Tissue	CellType	Marker	Resource
Mouse	Small intestine	Brush cell	Dclk1, Trpm5, 1110007C09Rik, 1810046K07Rik, 2210016L21Rik, Acot7, Adh1, Agt, Aldh2, Alox5, Alox5ap, Arpc5, Asah1, Atp2a3, Avil, Bcl2l14, Bmx, Bpgm, Bub3, Ccdc109b, Ccdc23, Ccdc28b, Cd24a, Cd47, Coprs, Csk, Ethe1, Fam221a, Ffar3, Fyb, Galk1, Gfi1b, Gga2, Gimap1, Gnai2, Gng13, Gprc5c, Hck, Hmx2, Hpgds, Il13ra1, Il25, Ildr1, Inpp5b, Inpp5d, Inpp5j, Itpr2, Kctd12, Krt18, Krt23, Lect2, Lima1, Limd2, Lrmp, Ltc4s, Ly6g6d, Ly6g6f, Matk, Mlip, Mocs2, Myo1b, Ndufaf3, Nebl, Nt5c3, Pea15a, Pik3cg, Pik3r5, Pim3, Pla2g16, Pla2g4a, Plcg2, Pou2f3, Ppp3ca, Ptgs1, Ptpn18, Ptpn6, Pygl, Rac2, Rbm38, Reep5, Rgs13, Rgs2, Sec14l1, Sh2d7, Skap2, Smpx, Snrnp25, Spib, Tmem141, Tmem176a, Tmem176b, Tmem45b, Tmem9, Tspan6, Tuba1a, Vav1, Vdac3, Zfp428, 0610040J01Rik, 1110008P14Rik, 1110058L19Rik, 1300002K09Rik, 1700112E06Rik, 2010111I01Rik, 2700086A05Rik, 4930427A07Rik, 4930455F23Rik, 4930539E08Rik, 4931406H21Rik, 5430417L22Rik, 9030624J02Rik, 9430023L20Rik, A4galt, AA467197, Abca3, Abcc3, Abhd16a, Abhd2, Abhd5, Acacb, Acsl4, Acss2, Adam22, Adcy5, Ajuba, Ak7, Akr1b10, Aldh3a2, Alkbh7, Angel1, Ankrd12, Anxa11, Anxa4, Ap1s2, Apobec1, Arap2, Arf3, Arhgap4, Arhgap8, Arhgef2, Arhgef28, Arl5a, Armcx1, Atat1, Atf7ip, Atp13a2, Atp2b2, Atp6ap1, Atp6v1d, Atp8a1, Atxn1, B4galt4, B4galt5, Basp1, BC016579, BC022687, Bicd1, Bmp2, Brms1, C2, Cables2, Cachd1, Cacna2d2, Calm2, Calml4, Camk2b, Camkk2, Camta2, Cap1, Capg, Card10, Casp3, Cblb, Cbr3, Ccdc129, Ccdc68, Ccnj, Ccrl1, Cd300lf, Cd37, Cdc42se1, Cdhr5, Cdkn1a, Ceacam2, Chat, Chdh, Chi3l1, Chn2, Cib2, Ckap4, Clic4, Clmn, Cmip, Cmtm3, Cpeb4, Cpm, Cpne3, Cpne5, Cpvl, Crot, Cwh43, Cyhr1, Cyp17a1, Cystm1, D330041H03Rik, D730039F16Rik, Dapp1, Dcp1b, Ddah1, Ddah2, Desi1, Dgki, Dmxl2, Dpysl2, Dsp, Dtnb, Dusp14, Dvl1, Dynlt1b, Eef2k, Ehf, Eml3, Enc1, Enpp4, Epha4, Eppk1, Ero1lb, Espn, Esyt1, Exph5, Fam101a, Fam117b, Fam171a1, Fam188a, Fam49a, Fam49b, Fam57a, Fbxl21, Fbxo25, Fcna, Fes, Fn1, Fnbp1, Folr1, Fryl, Fut2, Gabarapl2, Gadd45a, Gcnt1, Gde1, Gimap5, Gimap8, Gimap9, Glyctk, Gm17660, Gm4952, Gmip, Gna14, Gpcpd1, Gpr137b-ps, Gprc5a, Gramd1c, Gyg, Gys1, H2-D1, Hap1, Hdac6, Hebp1, Hist3h2a, Hivep2, Hk1, Hmx3, Homer3, Hsbp1, Hsbp1l1, Hsf2, Hspa4l, Hspb11, Ifi27l1, Ifitm1, Ifnar2, Il17rb, Il4ra, Iqsec1, Jarid2, Jmy, Kalrn, Kcnd3, Kcnj16, Kcnq4, Kctd13, Kctd15, Kdm4a, Kif21b, Kit, Klf3, Klf6, Klhl28, Krt222, Lca5, Lman2l, Lmbr1, Lmf1, Lmtk2, Lpcat4, Lrch4, Lrrc42, Lyn, Lzts2, Madd, Malat1, Man2a1, Map1a, Map4k4, March2, Mgst3, Mical1, Mical3, Mll1, Mllt4, Mn1, Morf4l1, Mov10, Msi2, Mtmr11, Myadm, Myo6, Myrfl, Myzap, Narf, Nav2, Ncf2, Nek7, Neurl1a, Nfatc1, Nfe2l3, Nptn, Nradd, Nrbp2, Nrep, Nrgn, Nsf, Nsfl1c, Nudt14, Oas1a, Oas1g, Oas2, Ogdhl, Omd, Opn3, Osbpl3, Otud7b, P2rx1, Pacs2, Palld, Pdcl, Pde6d, Pde9a, Pdpk1, Pfkfb3, Pgm2l1, Phf17, Phlda1, Pigc, Pik3r3, Pip5k1b, Pip5kl1, Pkp1, Plcb2, Pld2, Plek, Plekhg5, Plekho2, Plekhs1, Plk2, Pnpla3, Pnpla6, Pparg, Ppp1r14c, Ppp1r3b, Ppt1, Prcp, Prox1, Prr15, Prss53, Psd3, Pstpip2, Ptplad1, Ptpra, Ptprc, Ptprj, Rab4b, Rab5b, Rabgap1, Rabgap1l, Rdx, Rgl2, Rgs14, Rgs19, Rgs22, Rhbdf1, Rhoc, Rhog, Rilpl2, Rit1, Rmdn1, Rmnd5a, Runx1, S100a1, S100a11, Samd14, Samd9l, Scand1, Sept8, Serpini1, Sfxn3, Sh2d6, Shkbp1, Siae, Siglec5, Siglecf, Sik1, Sirt5, Slc16a2, Slc18a3, Slc25a12, Slc26a2, Slc27a1, Slc41a3, Slc4a2, Slc4a7, Slc4a8, Slc9a9, Slco4a1, Smtn, Smug1, Socs1, Sort1, Sox9, Spa17, Spire2, Ssx2ip, St18, St6galnac2, St6galnac6, Stard5, Stat2, Stk38, Stk40, Stox2, Strada, Strip2, Stx3, Sucnr1, Suco, Sufu, Svil, Tas1r3, Tbc1d1, Tbcb, Tcta, Tead1, Tfpi2, Tiparp, Tle3, Tm4sf4, Tmem116, Tmem121, Tmem158, Tmem160, Tmem229a, Tmem245, Tmem38b, Tmem51, Tmem65, Tmem74b, Tnfaip3, Tor4a, Tppp3, Trak1, Trib2, Trim38, Trim40, Ttll10, Ttll11, Ttll7, Txndc16, Ube2j1, Ubl7, Ubtd1, Unc5b, Usp49, Uspl1, Vamp8, Vmn2r26, Vps53, Wdfy2, Wdr7, Wnk2, Ypel2, Ypel3, Zbtb41, Zdhhc17, Zfhx3, Zfp710, Zmiz1, Znf512b	29144463
Mouse	Small intestine	Dendritic cell	Cd74, Cd83, Cd86, Itgax	29474909, 31618654, 27832135
Mouse	Small intestine	Enterocyte	Alpi, Apoa1, Apoa4, Fabp1	29474909, 29144463
Mouse	Small intestine	Enteroendocrine cell	Chgb, Neurog3, Tac1, Anxa6, Aplp1, Bex2, Cacna2d1, Cck, Celf3, Chga, Cldn4, Cnot6l, Cplx2, Fabp5, Fam183b, Fev, Gfra3, Gng4, Gpx3, Insm1, Isl1, Maged1, Neurod1, Ngfrap1, Nkx2-2, Olfm1, Pax6, Pcsk1, Pcsk1n, Prnp, Resp18, Riiad1, Rimbp2, Rph3al, Scg3, Scg5, Scgn, Slc39a2, Tox3, Tph1, Trp53i11, Vim, Vwa5b2, 1700086L19Rik, 2610301B20Rik, 5430425J12Rik, Acadsb, Acsl6, Adgb, Adora3, Adprm, Akna, Ambp, Amigo2, Ap3b2, Apbb1, Azi1, Baiap3, Bambi, Bax, Bcmo1, Bex1, Btbd17, Btg2, Cacna1a, Cbfa2t2, Cdk2ap1, Cdkn1a, Cdkn1c, Cerkl, Chd7, Chst11, Cidea, Cited2, Cpe, Cplx1, Cryba2, Ctif, Dbpht2, Ddc, Disp2, Dnahc9, Dner, Dock4, Efcab1, Emb, Fam135a, Fam160a2, Fam43a, Ffar1, Ffar2, Fgd2, Foxa2, Fxyd6, Gadd45a, Galr1, Galr3, Gatm, Gch1, Gck, Gdap1l1, Gfra1, Ghrl, Gm43861, Golga7b, Golim4, Gpr116, Gpr119, Gstz1, Hmgn3, Hnrnph3, Hrh3, Ids, Itm2c, Kcnb2, Kcnh6, Kcnk16, Kirrel2, Klhdc8b, Klhl31, Klhl32, Krt7, Lhfpl2, Lhx1, Lrp11, Lrrc16b, Lypd1, Maml3, Map1b, Map3k15, Map9, Mapk15, Mapk8ip2, Mapkbp1, Mapre3, March4, Marcks, Marcksl1, Mreg, Mtch1, Mum1l1, Myl7, Myt1, Ncald, Nefm, Nek5, Neurod2, Nisch, Pam, Parp6, Pax4, Pax6os1, Pcp4l1, Pde11a, Pde1c, Peg3, Phldb2, Pitpnc1, Pkia, Plk5, Plxnb1, Pnmal1, Prkar1b, Prodh2, Ptov1, Ptprn, Ptpru, Pycr2, Rab31, Rab36, Rab3c, Rapgef4, Rasd1, Rbfox2, Rbp4, Rfx6, Rnf122, Rprml, Rufy2, Rundc3a, Scarb1, Scg2, Scn3a, Sct, Sh2d5, Slc18a1, Slc25a4, Slc26a4, Slc35d3, Slc8a1, Snap25, Sphkap, Spred3, Sstr1, Sstr5, Syp, Syt13, Tekt2, Th, Tmem106c, Tmem130, Tmem182, Trf, Trit1, Trpm2, Tubb3, Unc13a, Wbp5, Xpnpep2, Zc3h12c	24603700, 29144463
Mouse	Small intestine	Epithelial cell	Cldn4	29474909, 31618654, 24603700
Mouse	Small intestine	Glial cell	Plp1, S100b	33288908
Mouse	Small intestine	Goblet cell	Agr2, Muc2, Tff3, Arf4, Atoh1, AW112010, Bace2, Bcas1, C1galt1c1, Calr, Capn9, Ccl9, Clca3, Cmpk1, Cmtm7, Creb3l1, Creb3l4, Creld2, Dap, Ddost, Dnajc10, Ergic1, Ern2, Fcgbp, Fkbp11, Foxa3, Gale, Galnt12, Galnt7, Gcnt3, Guca2a, Guk1, Hgfac, Hpd, Kdelr2, Kdelr3, Klf4, Klk1, Krtcap2, Lrrc26, Manf, Nans, Oit1, Ostc, Pdia3, Pdia5, Pdia6, Pla2g10, Qsox1, Ramp1, Rep15, S100a6, Scin, Sdf2l1, Sec61b, Sep15, Serp1, Sh3bgrl3, Slc12a8, Slc50a1, Smim6, Spdef, Spink4, Ssr2, Ssr4, Stard3nl, Tm9sf3, Tmed3, Tmed9, Tmsb10, Tnfaip8, Tpd52, Tpsg1, Tram1, Tspan13, Tsta3, Ttc39a, Txndc5, Uap1, Vimp, Wars, Xbp1, Zg16, 0610007N19Rik, 1700066B19Rik, 1810007I06Rik, 1810055G02Rik, 4930404N11Rik, 5033406O09Rik, Aacs, Adam9, Adrbk1, AI597468, Akr1c14, Aldh3b2, Alyref2, Ang, Ank3, Ano7, Anxa3, Appl2, Arfgap1, Arfip2, Arl1, Art2a-ps, Asns, Asph, Atf4, Atp2c2, B3gnt3, B3gnt5, B3gnt7, Bcat2, Bet1, Bet1l, Bhlhe40, Bmp8a, Bscl2, C1galt1, C2cd2l, Camsap3, Cant1, Capn7, Capn8, Capns1, Car8, Cbfa2t3, Ccl6, Ccnd3, Cd9, Cd97, Cdk5rap3, Cgref1, Chrm1, Chst4, Clca1, Clptm1l, Cltb, Cmtm8, Cog3, Cog6, Copb1, Copb2, Copg1, Cpd, Cracr2b, Csrp1, Cyp2j9, Cyp51, D10Bwg1379e, D17Wsu104e, D630039A03Rik, Dad1, Dcbld2, Dnajb11, Dnajc3, E130003G02Rik, Edem1, Edem2, Edem3, Efcab4a, Efcab4b, Ehd4, Eif2ak3, Eif2ak4, Eif4ebp1, Entpd4, Etnk1, F2rl1, Fam114a1, Fam174b, Fam3c, Fam69a, Fam98a, Far1, Fgfr3, Fhl1, Fry, Fut4, Fut8, Fxyd3, Gal3st2, Galk2, Galnt10, Galnt3, Galnt4, Galnt5, Galnt6, Galntl6, Gcc2, Gfi1, Gfpt1, Ggcx, Gm1123, Gm9994, Gmds, Gmppa, Gmppb, Gne, Gnpnat1, Golga5, Golgb1, Golm1, Golph3l, Golt1b, Gorasp1, Gorasp2, Gpr180, Gpr20, Gsn, H13, H2-T9, Hdlbp, Herpud1, Hid1, Hilpda, Homer2, Hsp90b1, Hspa13, Hspa5, Hyou1, Ica1, Ick, Id4, Ier3ip1, Ift20, Ikbip, Impad1, Itga2, Jtb, Kcnh3, Kcnk6, Kctd14, Kif13a, Lamc2, Liph, Litaf, Lman1, Lss, Mansc1, Mcf2l, Mesdc1, Mfsd7a, Mgat3, Mia3, Mknk2, Mllt3, Mlph, Mmp7, Mon1a, Morf4l2, Myo5c, Naga, Nfkb2, Nipal2, Nucb1, Odf2l, Osbpl2, Ost4, P2rx4, Pacsin1, Parm1, Pck1, Pcsk7, Pcsk9, Pdia4, Pdxdc1, Pgm3, Plac9a, Plaur, Plcb1, Pllp, Pmm2, Ppapdc1b, Ppib, Pqlc3, Prr24, Prrc1, Ptger4, Ptprr, Pygb, Pyroxd1, Rab27b, Rab3d, Rap1gap, Rasa4, Rasd2, Rasef, Rassf6, Rcan3, Rell1, Rfc1, Rnase1, Rnf39, Rpn1, Rpn2, Rrbp1, S100a14, S100a16, Samhd1, Sar1a, Sc4mol, Scamp1, Scnn1a, Sec16a, Sec22b, Sec23b, Sec23ip, Sec24d, Sec61a1, Sec61g, Sec62, Sel1l3, Selm, Sgsm3, Sh3bgrl2, Sh3pxd2a, Sidt1, Sil1, Slc10a7, Slc16a6, Slc17a9, Slc1a5, Slc22a15, Slc22a23, Slc30a7, Slc35a1, Slc35a2, Slc35c1, Slc37a1, Slc37a3, Slc38a10, Slc39a1, Slc39a11, Slc39a7, Slc41a2, Slc7a4, Smim14, Smim14_ENSMUSG00000037822, Smim3, Smim5, Snhg18, Spats2l, Spcs2, Spcs3, Sppl2a, Spryd3, Srd5a1, Srm, Srp72, Srp9, Srpr, Srprb, Ssr1, Ssr3, St3gal1, St3gal6, Stk38l, Stt3a, Stx17, Stx5a, Stxbp6, Sybu, Syngr2, Synj2, Syt7, Sytl2, Sytl4, Syvn1, Tars, Tbc1d30, Tbrg1, Tc2n, Tdrd7, Tfcp2l1, Tinagl1, Tm9sf2, Tmbim4, Tmco3, Tmed2, Tmem123, Tmem159, Tmem165, Tmem183a, Tmem214, Tmem248, Tmem39a, Tmem56, Tmem63a, Tmprss2, Tnfrsf21, Tnk2, Tom1l1, Tor3a, Tpcn1, Trabd, Trim47, Tspan1, Tst, Tulp4, Tvp23b, Txndc11, Uba7, Ufl1, Ufsp2, Uggt1, Ugp2, Utp11l, Vps37c, Yif1b, Yipf3, Yipf5, Yipf6, Zbp1, Zbtb8a, Zc3h7a, Zfp330, Zfp467	29144463
Mouse	Small intestine	IgA memory B cell	Cd79a, Ptprc, Sdc1	19716372
Mouse	Small intestine	Intestinal crypt stem cell	Bmi1, Lgr5, Abcg2, Alcam, Cd24a, Cd44, Dclk1, Hspa5	23644405, 22190486, 22134889, 19676123, 17934449, 18536716
Mouse	Small intestine	Neuroblast (sensu Vertebrata)	Ascl1	33288908
Mouse	Small intestine	Neuron	Elavl4, Tubb3	33288908
Mouse	Small intestine	Paneth cell	Ang4, Defa22, Defa24, Lyz1, AY761184, Defa17, Defa21, Defa26, Defa3, Gm14851, Gm15292, Mptx2, Defa-rs1, Gm15284, 1810010D01Rik, Acox2, Acvr1c, Ang2, Ang5, Ang6, Apoc2, AY761185, C4bp, Cd244, Clps, Copz2, Dafa17, Darc, Ddx26b, Defa-ps1, Defa-rs7, Defa20, Defa23, Defa25, Defa4, Defa5, Defa6, Defb1, Dkk3, Dll3, Fam46c, Fgfrl1, Fzd9, Ggh, Gm10104, Gm14850, Gm15293, Gm15299, Gm15308, Gm15315, Gm21002, Gm21498, Gm6696, Gm7325, Gm7849, Gm7861, Habp2, Hapln4, Hspb8, Insrr, Itln1, Klf15, Lamb1, Lyz2, Mmp7, Mptx1, Pla2g2a, Pla2g2f, Pnliprp1, Pnliprp2, Reg4, Samd5, Scgb2b19, Scgb2b20, Scgb2b7, Slc16a7, Slc1a4, Slc30a2, Sntb1, Sync, Syne4, Tesc, Thbs1	29474909, 29144463
Mouse	Small intestine	Progenitor cell	Sox10	33288908
Mouse	Small intestine	Schwann cell precursor	Dhh, Plp1	33288908
Mouse	Small intestine	Stem cell	Ascl2, Axin2, Gkn3, Lgr5, Olfm4, Slc12a2	29144463